The original work behind BiomeLogic
This is not another article index. It collects the analytical assets BiomeLogic actually produces: a named mechanistic framework, evidence maps that show the strength behind each step, the method used to build and retire claims, and the infrastructure that would govern any future case synthesis.
Throughout, peer-reviewed external literature is kept visually and verbally distinct from BiomeLogic synthesis and inference. Educational systems-biology analysis — not diagnosis, prescribing, or medical care.
The Host Capacity Model
The canonical reference for the model: what it proposes, what it does not establish, the mechanism map, predictions labelled as predictions, competing explanations, falsifiability conditions, and a suggested citation.
Citation-ready mechanism maps
Each row states one mechanistic step, its evidence tier, what it does not establish, and its references — resolved from the BiomeLogic claim registry rather than written by hand. The Host Capacity Model map currently carries 16 rows.
How claims are built, labelled, and retired
Source hierarchy, the line between mechanistic inference and direct evidence, how contradictory evidence is handled, how uncertainty is labelled, and the correction process.
Topic frameworks already published
Longer-form frameworks that extend the model into specific problem areas.
Infrastructure, not a case series
BiomeLogic does not currently publish any case syntheses. The schema, publication gate, and disclaimers exist so that if approved public case material is ever published, it is presented under fixed rules. No example or illustrative patients are published, because a fabricated case is indistinguishable from a real one to a reader.
Things you can quote and cite
Stable anchors, suggested citations, and a print-optimised brief. Reference identifiers come from the claim registry; nothing is generated for effect.
What this material is and is not
BiomeLogic is independent systems-biology analysis and writing. It does not diagnose, prescribe, treat, or replace medical care, and nothing here asserts that any intervention works.