Foundational essays
Foundations.
The deepest conceptual frameworks of BiomeLogic — written to last.
Why Host Capacity
On the inversion of the dysbiosis-first paradigm.
An argument for placing the host's bioenergetic capacity, not microbial composition, at the center of how chronic gut dysfunction is reasoned about.
Dysbiosis as Adaptation
Reading microbial communities as ecological systems.
Microbial communities track substrate, gradients, and disturbance regimes. Treating them as patients themselves obscures the lever that moves them.
The Bioenergetic Lens
On reading complex chronic illness as energy-economic problems.
A short methodological essay on why the bioenergetic lens repeatedly resolves what the categorical lens cannot.